PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1369s0003.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 713aa    MW: 77716.3 Da    PI: 5.4011
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1369s0003.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.5e-18107206198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ grlv+pkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G  ++ ++ +L +gD v+F++ +
  Kalax.1369s0003.3.p 107 FEKTLSASDAGRIGRLVVPKKCAEAYfpHISQPEGLPLKVQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTSYIQSMQLLAGDKVTFSRLE 195
                          99**************************556667778***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Kalax.1369s0003.3.p 196 -PEGKLVMGFRK 206
                          .77777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-30100208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20104206IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-22105206No hitNo description
PROSITE profilePS5086311.251107208IPR003340B3 DNA binding domain
PfamPF023621.0E-15107206IPR003340B3 DNA binding domain
SMARTSM010197.6E-21107208IPR003340B3 DNA binding domain
PROSITE profilePS5105014.149328378IPR011124Zinc finger, CW-type
PfamPF074966.4E-12333375IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MEMLSAKENS SALRLEPLLK TSSANESNCE MTASGSLLRA APLSQPPKSF HSNHSSEFDP  60
CSETPVQNGR SRGDGRNKNQ LLTRYLPRTT DEELQKIAGS SEIKPLFEKT LSASDAGRIG  120
RLVVPKKCAE AYFPHISQPE GLPLKVQDVK GKEWVFQFRF WPNNNSRMYV LEGVTSYIQS  180
MQLLAGDKVT FSRLEPEGKL VMGFRKASNG STDLDDEPNK ISNNGDASAR INSNLSRADK  240
SGYIAKDIMN AKSSVSRKRK SSTFSSNRHL LFESMDVCEL KITLEEAQRL IRPSPSHLSH  300
VGIVENEIEE FEDCPVIGKP TIFTTDQMGE SIQWAQCEDC LKWRRLPADA LLPAKWICSK  360
NKWDLARSTC SSPQDISDEQ LDNLLFPKNQ SASKKMRAAN QEVETVEGLE GLDALANLAI  420
LGEGQAIASS GHITTKHPRH KMGCSCIVCI QPPSGKGLKH KHTCDCTVCL TVKRRFQTLM  480
LRREKKQQEK DAEAASEKQQ GCSLLIEKSP ENDPLTQEDS SAATPTLKEA TDEGSVDISF  540
GKESSASTLK GQIDLNIKPE RDDPLISSEL DTLMFSYNTA EAVDQMQSSI HCASTELVRD  600
PTQTVEVVDG TGSASVTNQL VAAPPADAHP EKESSPTVKV EETIVNSTGT TSVTNQLVAA  660
PPADAHPEKE SSPAVKVVEA IIDGTDTARI TNQLAAARPD EESTPTVTTT SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-1510621513123DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467888.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G41e-168Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067GK210.0A0A067GK21_CITSI; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-142HSI2-like 1